PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G22390.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 235aa MW: 24829.3 Da PI: 10.4909

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G22390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.9	2.3e-25	139	183	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ OGLUM04G22390.1 139 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 183 69***************************************9987 PP
2	QLQ	55	2.5e-19	74	110	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k OGLUM04G22390.1 74 SALTFMQRQELEHQVLIYRYFAAGAPVPVHLVLPIWK 110 799*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MLAEGRQAYS PPPPPPSKLP RLSGTDPTDG VVTMAAPSPL VLGLGLGLGG SGSDRSGSDA 60 EASAATVREA RPPSALTFMQ RQELEHQVLI YRYFAAGAPV PVHLVLPIWK SIAAASSFGP 120 QSFPSLTGSL CFDYRSSMEP EPGRCRRTDG KKWRCSRDVV PGHKYCERHV HRGRGRSRKP 180 MEASAAVAPT SLPVRPALHT VATLATSAPS PSHLGFSSAS KVLLAHTTTG TTRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	GRGRSRKPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-37	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G22390.1