PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G22920.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 463aa MW: 51100.6 Da PI: 6.0896

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G22920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +++G W++I +++g ++t+ q++s+ qk+ OGLUM04G22920.1 59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MARFQETKAR NDQGPVADHV GHQNHMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE 60 KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNCNSLG 120 AAPSIQIPPP RPKRKPVHPY PRKLGSTASK NVPALKQLEK PQLQVQSLYD QDNGSPTSVL 180 TVPQIRADTL GSESGGSPTS TIDIEERCPT PSIATAELAV ELPPTNDEEV KGNGDHEEVT 240 CDRSGVPVLR LFGKRVMVND LHQMSAPDAG NLQTVADMEV DASAETPTSG TGKFSSHGAA 300 EANTWNPWLT NTQQFLYYLP NGQIFSVHSA LPCFTFHNEG VTCTQFSNPQ VVASDQQHQH 360 QTSEAVDYKG IQREGSWTES NTSSSSVPET ATHNSETTES YRNGNRNEDE MVPSPDSRKC 420 VSPGSNCRRG FVPYKRCVAD SEALLKSQAP QEEADGEMTR LCL

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MARFQETKAR NDQGPVADHV GHQNHMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNCNSLG  120
AAPSIQIPPP RPKRKPVHPY PRKLGSTASK NVPALKQLEK PQLQVQSLYD QDNGSPTSVL  180
TVPQIRADTL GSESGGSPTS TIDIEERCPT PSIATAELAV ELPPTNDEEV KGNGDHEEVT  240
CDRSGVPVLR LFGKRVMVND LHQMSAPDAG NLQTVADMEV DASAETPTSG TGKFSSHGAA  300
EANTWNPWLT NTQQFLYYLP NGQIFSVHSA LPCFTFHNEG VTCTQFSNPQ VVASDQQHQH  360
QTSEAVDYKG IQREGSWTES NTSSSSVPET ATHNSETTES YRNGNRNEDE MVPSPDSRKC  420
VSPGSNCRRG FVPYKRCVAD SEALLKSQAP QEEADGEMTR LCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	8e-35	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G22920.1