PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G23410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 328aa MW: 34673.3 Da PI: 6.3984

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G23410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.9e-13	93	144	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+ OGLUM04G23410.1 93 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 144 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MALDALCSAG GDVLIYDTFN ASAAAAVAVV PPASFLFGNN NAGGAAGPET TVQVAAGAVP 60 EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP 120 ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS 180 AADQETPAAA AADGPPFARF FTYPQYVWCH NPAQDGGGGG GAAAENRAGV ADIEVSLVET 240 HASIRVMAAR RPGQLLKMVA GLQALRLTVL HLNVTALGSL ALYSISVKVE EGCGMATVDD 300 IAAAVHHVLC IIDAEAASQM LLAGEASG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	80	RRKRRRR
2	75	79	RKRRR
3	75	82	RKRRRRAR
4	94	105	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-53	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G23410.1