PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G23630.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 371aa MW: 39784.5 Da PI: 4.6807

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G23630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G +W++ ++ g+ R++k+c++rw +yl OGLUM04G23630.1 16 KGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799***************************99**********97 PP
2	Myb_DNA-binding	53.1	7.6e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l OGLUM04G23630.1 69 RGNFTAEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP 120 EQKKGGGKSK KKTTCTDVLV PSPSPSSSTT TTTNCSSGDS AGEQSNTSKE EEEETDKIEI 180 PMLELDPCCF DFDMLVDPVV PDTYCPAVSA SASASAPTSP CSSTSPSCAR AGVDPLLDLP 240 EIVDLGPELW SIMDGGSGDG CTEAPPPAWS NAAAAAAANA TVATTTSLEE EEGKEWWLED 300 LEKELGLWGP TDDYHCHPGP QGQPGRAGPP PSAVVEDPVS CYFQAGPTAA ATWQGHEPSA 360 VITSNPMDYY V

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP  120
EQKKGGGKSK KKTTCTDVLV PSPSPSSSTT TTTNCSSGDS AGEQSNTSKE EEEETDKIEI  180
PMLELDPCCF DFDMLVDPVV PDTYCPAVSA SASASAPTSP CSSTSPSCAR AGVDPLLDLP  240
EIVDLGPELW SIMDGGSGDG CTEAPPPAWS NAAAAAAANA TVATTTSLEE EEGKEWWLED  300
LEKELGLWGP TDDYHCHPGP QGQPGRAGPP PSAVVEDPVS CYFQAGPTAA ATWQGHEPSA  360
VITSNPMDYY V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	4e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G23630.1