PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G24370.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 212aa MW: 21545 Da PI: 6.9612

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G24370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	46.5	1.4e-14	65	98	35	68
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltgtsss 68 L++eLG++++++t++WLlqqa+pai +tgt+ s OGLUM04G24370.1 65 LTRELGHKSNGETVQWLLQQAEPAIVTATGTGVS 98 8******************************433 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MWGPPEDASA RREGEDPLSA AADIGGGGGG GGEEDAGARA EVELEQGPAH QGGRPGTTNP 60 DAGVLTRELG HKSNGETVQW LLQQAEPAIV TATGTGVSVD IPRALPPFPK LRPLQVAPPP 120 PPHVGCRRRA ARRVRGVRRC HIGFVTMFAG HAAAAMPGLE LGLSQDGHIG VLSARSLSQF 180 YHQVGGADAA DQLPHPAASS PTPSAAAGGR GG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-13	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G24370.1