PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G24780.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 223aa    MW: 22931.1 Da    PI: 10.2507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G24780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-192474155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  OGLUM04G24780.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                     689*******.**********8...2.35***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAPRNAAEAV AVAVAEGGGA GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPPLPK AAALAVVSPT SSTVESSSRD  120
TPAAAPVAAA AKAQVPASPS LDLSLGMSAM VAAQPFLFLD PRVAVTVAVA APVPRRPAVV  180
SFKKEVARLD EQSDTGSSSS VVDASPAVGV GLDLNLPPPT EEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.18e-20ERF family protein