PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28744 Da    PI: 6.7853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.6e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien +nrqvtfskRr g+lKKA+EL +LCda++ vi+fs tgk+yeyss
  OGLUM04G25090.1  9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSS 59
                     68***********************************************96 PP
2K-box51.44.7e-18851591487
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll.eqieelqkkekel 87 
                      +++  qe++++k+e++ L+   R+++G+dL sL+l++  +Leqq+e sl k+R +K++ ll +q+ e+ ++e ++
  OGLUM04G25090.1  85 QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIELSLYKVRLRKQQQLLdQQLLEMHNREMQI 159
                      67889************************************************9998765516788888888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVELKK IENPTNRQVT FSKRRMGLLK KANELAILCD AQIGVIVFSG TGKMYEYSSP  60
PWRIANIFDR YLKAPSTRFE EMDVQQRIIQ EMTRMKDENN RLRIIMRQYM GDDLASLTLQ  120
DVSNLEQQIE LSLYKVRLRK QQQLLDQQLL EMHNREMQIP GDQSNYLCHM NLIGEQAQAP  180
LMVNLKPFPL WDVGGSSQMY NQDAESSMTA LQLSPQLEYK LQPLQPNLQE EANLHGYIPK  240
DTMESGCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-39MIKC_MADS family protein