PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25460.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 314aa    MW: 33870.8 Da    PI: 6.8002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.1e-51111541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lppGfrFhP deelvv+yL +k++g        +    ++ +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgk
  OGLUM04G25460.1  11 LPPGFRFHPMDEELVVDYLYHKLSGGGgggageFYGGVAMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGK 104
                      79**********************9997776543332359**************8888899********************************* PP

              NAM  89 dkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      d++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OGLUM04G25460.1 105 DRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 154
                      ******977777777776777***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MSLISMMEAN LPPGFRFHPM DEELVVDYLY HKLSGGGGGG AGEFYGGVAM VDVDLNKCEP  60
WELPDAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK ATGKDRAIVT RRRAAAGEAV  120
AGGEVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGHAVA DHPSSSTSSS SSNLLKEDWV  180
LCRVFYKSRT ANPRPVVSGE AAVSLSGELS LPPPPPLPVA PAVVDGYTGG GYYEQDSSAG  240
YHHHHHRPPT SAALPFKDLT DFRDLLSNMV QGGGGGAAAA AAAKSEGFHL GWSEEESSGY  300
VQQSAMASQA WNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.14e-66NAC family protein