PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G25770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 77aa MW: 8119.05 Da PI: 4.4554

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G25770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.3	3.3e-11	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s++yeA+a+a dPv+Ga gv+l+l++ql++lk++la+++++ OGLUM04G25770.1 1 MASVAYEADAQAADPVRGADGVVLDLERQLDCLKTDLATTQSK 43 89*************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence
MASVAYEADA QAADPVRGAD GVVLDLERQL DCLKTDLATT QSKLALYRRR YAEPPPADAA 60 AAATAGTDTL DRARALN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-07	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G25770.1