PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G26290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 437aa MW: 45779.2 Da PI: 7.3319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G26290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	329	366	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L OGLUM04G26290.1 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGD TAWSSALAAG 60 YDGMVADNGG KQAKSTTTAS SESPGNNSSV TFQEPASIPD PAAVAAVPQP GLAGFTDWTQ 120 PFMNNGAGLH EFLQDGHHDM SASSLMNHSS NNLALQQAGH HHELLSSFGS DLLLSPTSPY 180 GGFQSSLLRS LMEPTAKQQQ QQPALAGLQQ YHQYQQQMGH TPAAAAKFAQ AVGARDSLQF 240 TNDAPFWNPS AGFGMPAAVA VAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD 300 SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI 360 EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGD ISLKGRGLCL VPISSTFAVA 420 SEVPVELWTP FGANFIR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGD TAWSSALAAG  60
YDGMVADNGG KQAKSTTTAS SESPGNNSSV TFQEPASIPD PAAVAAVPQP GLAGFTDWTQ  120
PFMNNGAGLH EFLQDGHHDM SASSLMNHSS NNLALQQAGH HHELLSSFGS DLLLSPTSPY  180
GGFQSSLLRS LMEPTAKQQQ QQPALAGLQQ YHQYQQQMGH TPAAAAKFAQ AVGARDSLQF  240
TNDAPFWNPS AGFGMPAAVA VAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD  300
SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGD ISLKGRGLCL VPISSTFAVA  420
SEVPVELWTP FGANFIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	4e-48	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G26290.1