PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G27370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 232aa    MW: 25270 Da    PI: 10.0931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G27370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-1761110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  OGLUM04G27370.1  61 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 110
                      69*****99.**********732...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MQGEYHRSSS EDSAASAAAA AAAAAAAMAP LAAAAAAVAA KEEQAAAAAV LPLQQQQPRR  60
QYRGVRMRKW GKWVAEIREP HKRTRIWLGS YATPVAAARA YDTAVFYLRG RSARLNFPEE  120
ISSLASLSEG GGASEPREPD GGTLSAASIR KKAIEVGSRV DALQTGMMVA PTTHHRERQK  180
HHHHHHHHPH LQPHGEEQHH HHEQKHQRTA WSGRAKNPDL NQAPSPESSD AE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.19e-42ERF family protein