PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G27860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 139aa    MW: 14882.5 Da    PI: 4.9109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G27860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.5e-21252155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr+++ +g+WvAeIr+p        +r++lg++gtae+Aa+a+++a++ + g
  OGLUM04G27860.1  2 TKYKGVRQRH-WGSWVAEIRHP-----LlkTRIWLGTYGTAEDAARAYDEAARLMSG 52
                     69*******9.**********8.....334**********************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MTKYKGVRQR HWGSWVAEIR HPLLKTRIWL GTYGTAEDAA RAYDEAARLM SGPAARTNFP  60
LSSGGGNARS CLSPTLRARL EKCCGAGSSA QAQQGAVAGQ DDNDDAAAAA AMGVDDGDEY  120
VEEMIQELTF YGSIEIVQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-26ERF family protein