PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G28480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1036aa    MW: 114229 Da    PI: 6.8279
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G28480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23224325199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +++
  OGLUM04G28480.1 224 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDE 314
                      89*********************999*****9555555.49************************************************..456 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++v+r+
  OGLUM04G28480.1 315 KSQLLLGVRRA 325
                      77789999997 PP
2Auxin_resp117.31.3e-38350432183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaas++s F+++YnPr+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+
  OGLUM04G28480.1 350 AAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 432
                      79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    
MRNHGFPPRK VGIFRAKQPR SAASHTGAAA GERLGSQDQE REGKRRKGEE GSTTTLLRII  60
AIYCPHPTTT PTPVYSTPQP LLLPPREKAK TGVLRNAAAL LDEMQLMGET QGAKKVINSE  120
LWHACAGPLV CLPQRGSLVY YFPQGHSEQV AATTRKIPNS RIPNYPNLPS QLLCQVHNIT  180
LHADKDTDEV YAQMTLQPVN SETDVFPIPT LGAYTKSKHP TEYFCKNLTA SDTSTHGGFS  240
VPRRAAEKLF PQLDYSMQPP NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK  300
RLKAGDSVLF IRDEKSQLLL GVRRATRQQT MLSSSVLSTD SMHIGVLAAA AHAASSGSSF  360
TIYYNPRTSP SPFVIPVARY NKATYMQPSV GMRFAMMFET EESSKRRYTG TVVGISDYDP  420
MRWPNSKWRN LQVEWDEHGY GERPERVSIW DIETPENTLV FPSSTLNSKR QCLPGYGVSV  480
PGMEIGSANM SSFPRAQGNP YGSLQHIPAV GSELAIMLLN QSGQTLGSPL SFHQSSYSSI  540
IQNVKQNYIP PLTVSTSACL TKQESLPSDD AQHQFHMANM QNGDLEGSEV QPVIDLISES  600
KLNATSRDPR NTDSYTSRST SEQNSKGEPR GKTRRSKKGL PHKTVSEKSD LSSAPSWICD  660
NQQVGLESKL VGCDEQVNCG NIEDSSGALT QGNFVGQPHG HQVEQKGVLS PPKVESSKSP  720
DGGKSVNSFP NQGCFSQFID GLDWMTQPSY YQDSNVIQPA GVSENIFSSS ADIPPSMIAD  780
TMETFQASCL SDCLPNSIQE FISSPDLNSL TFLSPDMQNL EVQLQHDGSN LPSTSNSFVQ  840
MSFSEESASQ SENLSGLHME STHRSINTTS CSQPMSTGGF DAGMYSKLPR LKESQILSLP  900
EIHTNSMGTS ACSMDATEYS LDRSAKPMKP PVRTYTKVQK QGSVGRSIDV TGFRNYHELR  960
SAIACMFGLQ GKLEHPGSSE WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ  1020
MSENGMHVLN DCIQAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein