PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G28860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 190aa    MW: 19918.5 Da    PI: 9.3677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G28860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191363155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +gr++AeIrdp +   r+r++lg++++ae Aa+a++ a+++l+g
  OGLUM04G28860.1 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 63
                     68********.**********843...6*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MVGGEVMCEA AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTYDSAEAA ARAYDVAARN  60
LRGPLARTNF PLVSSLPLPS PHYHLPGKAA AAAPPVVGPA CSASSTVESS SGPRGPRPAA  120
TAAAVPRRRV PRPAPPAPDA GCHSDCASSA SVVDDADDAS TVRSRVAAFD LNLPPPLDRD  180
HVDLCTDLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-21ERF family protein