PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G29010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 384aa MW: 40836.5 Da PI: 9.2261

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G29010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.7	5.6e-17	64	150	2	71
trihelix 2 WtkqevlaLiearremeerlrr.gk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt +e+l Li+a+r +++r g +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ OGLUM04G29010.1 64 WTLHETLILITAKRLDDDRRAGvGGgaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 150 ***********9666655531224455667777777777***************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MSGSSAADPS PSASTAGAAA SPLALLRAHG HGHLTPPSAA TGPAPPPPSP ASGSAPRDYR 60 KGNWTLHETL ILITAKRLDD DRRAGVGGGA AAGGGGAGSP PTPRSAEQRW KWVENYCWKN 120 GCLRSQNQCN DKWDNLLRDY KKVRDYESRV AAAAVTGGAA TANSAPLPSY WTMERHERKD 180 CNLPTNLAPE VYDALSEVLS RRAARRGGAT IAPTPPPPPL ALPPPPSPPK PLVAQQQHHH 240 HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGA SESGEEEEGS GGEPEAKRRR 300 LSRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA 360 AVNSLSSAIH ALVSDHRSGD SSGR

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MSGSSAADPS PSASTAGAAA SPLALLRAHG HGHLTPPSAA TGPAPPPPSP ASGSAPRDYR  60
KGNWTLHETL ILITAKRLDD DRRAGVGGGA AAGGGGAGSP PTPRSAEQRW KWVENYCWKN  120
GCLRSQNQCN DKWDNLLRDY KKVRDYESRV AAAAVTGGAA TANSAPLPSY WTMERHERKD  180
CNLPTNLAPE VYDALSEVLS RRAARRGGAT IAPTPPPPPL ALPPPPSPPK PLVAQQQHHH  240
HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGA SESGEEEEGS GGEPEAKRRR  300
LSRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA  360
AVNSLSSAIH ALVSDHRSGD SSGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	301	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	4e-41	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G29010.1