PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 121aa    MW: 12978.8 Da    PI: 9.1825
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC100.11.7e-31221121999
            NF-YC  19 helPlarikkilka...dedv.......kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      h+lPlarikki+k    d  v       +mis eaPv++skacelfi +lt r+w  + e krrt++k d+aaav++td fdflvd+v  d
  OGLUM04G29990.1  22 HALPLARIKKIMKRsagDSSVvdggggaRMISGEAPVVFSKACELFIADLTRRAWAATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVTAD 112
                      89***********7333343334444448**********************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGDS SVVDGGGGAR MISGEAPVVF  60
SKACELFIAD LTRRAWAATL EGKRRTVHKE DVAAAVQNTD LFDFLVDVVT ADLGDDHTDY  120
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-30NF-YC family protein