PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G30490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 477aa MW: 51923.8 Da PI: 8.8548

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G30490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.4e-06	248	270	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H OGLUM04G30490.1 248 SCPDCGEIFVRPDSLHLHQSIrH 270 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKKLVVA SSKVDEKDKK QVDYKCSRSS 60 GRDECCKVES RHQQCTEPES PSYRLALRSL FSCRNSSSSS HAGHHHHRAA DGKKLGCNSA 120 SICKVKQDNP MQQHMRRAED ELKVKDKPPV AEPYCKRRAS VSACNISSER SVKKSVKQQQ 180 QEASSSLQSS ASISASSCSS TAGGGGSFRG MQQLSLRRLS GCYECHMVVD PISGVFRDSS 240 SMRATICSCP DCGEIFVRPD SLHLHQSIRH AVSELGAEDT SRNIISIIFQ SSWLKKQSPV 300 CAIDRILKVH NAARTLARFD DYRAAVKAKA MAHRHPRCTA DGNELLRFHC ATLSCDLGLH 360 GATHLCDHLS CAACAIIRHG FRPPAPGAGI RTMATSGRAH DAVVSSGSEG DRRAMLVCRV 420 IAGRVRREEA AAAEEEEEEE EYDSVAGTTP GLYSNLDELD VFNPTAILPC FVVVYRA

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKKLVVA SSKVDEKDKK QVDYKCSRSS  60
GRDECCKVES RHQQCTEPES PSYRLALRSL FSCRNSSSSS HAGHHHHRAA DGKKLGCNSA  120
SICKVKQDNP MQQHMRRAED ELKVKDKPPV AEPYCKRRAS VSACNISSER SVKKSVKQQQ  180
QEASSSLQSS ASISASSCSS TAGGGGSFRG MQQLSLRRLS GCYECHMVVD PISGVFRDSS  240
SMRATICSCP DCGEIFVRPD SLHLHQSIRH AVSELGAEDT SRNIISIIFQ SSWLKKQSPV  300
CAIDRILKVH NAARTLARFD DYRAAVKAKA MAHRHPRCTA DGNELLRFHC ATLSCDLGLH  360
GATHLCDHLS CAACAIIRHG FRPPAPGAGI RTMATSGRAH DAVVSSGSEG DRRAMLVCRV  420
IAGRVRREEA AAAEEEEEEE EYDSVAGTTP GLYSNLDELD VFNPTAILPC FVVVYRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	34	KKKKKKK
2	28	36	KKKKKKKKK
3	29	35	KKKKKKK
4	30	36	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-87	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G30490.1