PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G30530.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 523aa    MW: 56719 Da    PI: 5.4224
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G30530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3789.7e-25123227299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       k+lt+sd+++ g +++p+ +a+++       + ++ +s  lt+ d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  g  
  OGLUM04G30530.1 123 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAp 214
                      69*******************9777*****976676675..************************************************88655 PP

                      .SEE..EEEEE-S CS
               B3  88 .sefelvvkvfrk 99 
                        e++l+v+v+r+
  OGLUM04G30530.1 215 aPERKLLVGVRRA 227
                      7999999999986 PP
2Auxin_resp45.53.2e-16250325174
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 
                      a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++  Gm+++ + +e ed ++  +  Gt + +++ +  r 
  OGLUM04G30530.1 250 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 325
                      5778999***************************************9758***************99988666444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP  60
DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APAPAPAAAE LAEAESQEFR  120
YYAKQLTQSD ANNGGGFSVP RLCADHIFPA LNLDDDPPVQ SLTMGDLQGD SWEFRHIYRG  180
TPRRHLLTTG WSKFVNAKQL VAGDTVVFMW CGAPAPERKL LVGVRRAARY SGESACNARG  240
RVQPQEVMEA VRLAAEQAAF RVTYYPRHGA GEFVVPRVEV DKGLTTPWRC GMQVRAQVME  300
AEDTRRLAWL NGTLTNLRHQ QIWRTLEVEW DASAASSSMK NRFVNPWQVQ PVDFPPLPMG  360
LKISNNNISA PVCNGDSLLV PPILMHPQPQ PPADIQGARH NNGHAYADIP SSSTPSMVRT  420
QQLFPRDLQI LVPHTDIVTP QNGSPPDNPV NTPLSASDGM KTIQLFGVTI TSPVQGDTNG  480
AFASAQVNQV PEGVDDETAT EEASDTSLPD SLTNGYNQDG ARL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-75ARF family protein