PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G00230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 23571.1 Da    PI: 9.9258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G00230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0972119455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  OGLUM05G00230.1  72 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 119
                      8*************************9....555*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGQGAQDASW GKSRKHKRSN VGLKGLEEKK ARRVVLHQHD DDVKKKAKEA AGGEPPAGYI  60
HVRARRGQAT DSHSLAERVR REKISERMKM LQSLVPGCDK VTGKALMLDE IISYVQSLQN  120
QVEFLSMKLA SLSPLMYEFG PGIDMHPDVL RQLAKMPHEM VQCMGQMGST GISLQGLGGG  180
PTGFAQDGSS HMNMVVMQVG EQGQQQGSLH QTNAAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11448RKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-50bHLH family protein