PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G00490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 405aa MW: 44866.9 Da PI: 8.3353

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G00490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	93	115	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + L++H +H OGLUM05G00490.1 93 CSyeNCGKTFVDVAALRKHAHVH 115 77779**************9887 PP
2	zf-C2H2	18.5	5.4e-06	120	144	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s LkrH H OGLUM05G00490.1 120 YICQepGCGKKFVDSSKLKRHHLIH 144 889999***************9988 PP
3	zf-C2H2	18.9	4.2e-06	150	174	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH OGLUM05G00490.1 150 FICPhpGCGKAFSLDFNLRSHLKTH 174 789*********************9 PP
4	zf-C2H2	16.5	2.3e-05	180	204	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F++ s Lk+H + H OGLUM05G00490.1 180 HVCPfpACGKRFTSDSKLKSHVKGH 204 789999***************9988 PP
5	zf-C2H2	18.3	6.2e-06	265	290	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + +++ L+ H++t H OGLUM05G00490.1 265 YVCPydGCGKAYIHSYKLNLHLKTqH 290 9**********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEYAAPAGAG AGAGAGGYYY YPPSQQHKPR RPPRPAARWV KHWIPQDLAT SSGKCALYKW 60 VREDVYKNLK DGKAVPEPEA VKPEPTTEIL FLCSYENCGK TFVDVAALRK HAHVHNERQY 120 ICQEPGCGKK FVDSSKLKRH HLIHTGQKDF ICPHPGCGKA FSLDFNLRSH LKTHALENYH 180 VCPFPACGKR FTSDSKLKSH VKGHEKTGTP ITAQYVPSSD KPQSSSKPAT PATTKPTTPA 240 ATKTTTPAST KPTTPAPTSF AERPYVCPYD GCGKAYIHSY KLNLHLKTQH PEHGQEENGR 300 IAAHASEHAV NDRANQYNYA EIVDLAPNPK RSKTNSGHKT PSSNKAYNVK ISSVLPADIS 360 GVKNQWPGKY EDDSEETEED QGNNIEDGWR YGNQNADDEE TEYED

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEYAAPAGAG AGAGAGGYYY YPPSQQHKPR RPPRPAARWV KHWIPQDLAT SSGKCALYKW  60
VREDVYKNLK DGKAVPEPEA VKPEPTTEIL FLCSYENCGK TFVDVAALRK HAHVHNERQY  120
ICQEPGCGKK FVDSSKLKRH HLIHTGQKDF ICPHPGCGKA FSLDFNLRSH LKTHALENYH  180
VCPFPACGKR FTSDSKLKSH VKGHEKTGTP ITAQYVPSSD KPQSSSKPAT PATTKPTTPA  240
ATKTTTPAST KPTTPAPTSF AERPYVCPYD GCGKAYIHSY KLNLHLKTQH PEHGQEENGR  300
IAAHASEHAV NDRANQYNYA EIVDLAPNPK RSKTNSGHKT PSSNKAYNVK ISSVLPADIS  360
GVKNQWPGKY EDDSEETEED QGNNIEDGWR YGNQNADDEE TEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	4e-91	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G00490.1