PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G01090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 282aa    MW: 31764 Da    PI: 7.9009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G01090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-1453100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  OGLUM05G01090.1  53 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 100
                      79********************************************97 PP
2Myb_DNA-binding50.83.7e-16106151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++
  OGLUM05G01090.1 106 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 151
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVVKKAATMA EEEMMMRMMC GSGGNEMMKT KMKKKNREGE EEEEVSGGGR MRKGPWTEQE  60
DVQLVWFVRL FGERRWDFLA KVSGLKRTGK SCRLRWVNYL HPGLKRGRIT ADEERLILHL  120
HSQWGSRWSR IARSLPGRTD NEIKNFWRTH MRKIAHHAKK KTNSPSPAPT TSSGSLSSSL  180
TTATTTMATA AALQESSSCG GDDEAVDQLV AAATTPASQL LTMDYTMDQL WNDIAAAEAD  240
TSCYDAAAMA SPPSPVWEFC TDYSLWRIDD EEYYKKMLDA SQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-61MYB family protein