PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G01550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 416aa MW: 47482 Da PI: 8.5889

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G01550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	144	168	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+ s+srk++L+rH+ tH OGLUM05G01550.1 144 FSCHvdGCPFSYSRKDHLNRHLLTH 168 89*********************99 PP
2	zf-C2H2	11.1	0.0012	173	198	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++ F+ k n +rH + H OGLUM05G01550.1 173 FACPmeGCNRKFTIKGNIQRHVQEmH 198 78*******************98877 PP
3	zf-C2H2	20.6	1.2e-06	210	234	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk+F+ s L++H +H OGLUM05G01550.1 210 FICPeeNCGKTFKYASKLQKHEESH 234 78*******************9988 PP
4	zf-C2H2	16.8	2e-05	301	325	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ dC+ sFs ksnL +H + H OGLUM05G01550.1 301 RCHlkDCKLSFSKKSNLDKHVKAvH 325 7*******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV 60 DDLDDYLGRG GGEMRKEMDH DCKHWIPENS KMREGLEWTS TRMGRPFWEA PSRMPLSRSS 120 SGWGDSPEKL HQECLVHTLF QRPFSCHVDG CPFSYSRKDH LNRHLLTHQG KLFACPMEGC 180 NRKFTIKGNI QRHVQEMHKD GSPCESKKEF ICPEENCGKT FKYASKLQKH EESHVKLDYS 240 EVICCEPGCM KAFTNLECLK AHNKSCHRHV VCDVCGTKQL KKNFKRHQRM HEGSCVTERV 300 RCHLKDCKLS FSKKSNLDKH VKAVHEQKRP FVCGFSGCGK SFSYKHVRDN HEKSSAHVYV 360 QANFEEIDGE RPRQAGGRKR KAIPVESLMR KRVAAPDDDA PACDDGTEYL RWLLSG

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGEMRKEMDH DCKHWIPENS KMREGLEWTS TRMGRPFWEA PSRMPLSRSS  120
SGWGDSPEKL HQECLVHTLF QRPFSCHVDG CPFSYSRKDH LNRHLLTHQG KLFACPMEGC  180
NRKFTIKGNI QRHVQEMHKD GSPCESKKEF ICPEENCGKT FKYASKLQKH EESHVKLDYS  240
EVICCEPGCM KAFTNLECLK AHNKSCHRHV VCDVCGTKQL KKNFKRHQRM HEGSCVTERV  300
RCHLKDCKLS FSKKSNLDKH VKAVHEQKRP FVCGFSGCGK SFSYKHVRDN HEKSSAHVYV  360
QANFEEIDGE RPRQAGGRKR KAIPVESLMR KRVAAPDDDA PACDDGTEYL RWLLSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	8e-95	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G01550.1