PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G01700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 127aa    MW: 13749.7 Da    PI: 8.2909
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G01700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.62.8e-2638122197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++ Cvlapyfp ++p+kf  +h+            +lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q + +k+  
  OGLUM05G01700.1  38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHR------------ELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQWHGAKEFN 119
                      7*******************************997............99*************************************99888765 PP

           DUF260  95 all 97 
                      ++l
  OGLUM05G01700.1 120 SKL 122
                      555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP  60
PTEPHKFTTA HRELPEEQRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK QWHGAKEFNS  120
KLNHVLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-39LBD family protein