PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G02030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 335aa MW: 37075.1 Da PI: 6.1586

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G02030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63	6.8e-20	57	121	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf r+p qCk+kw+nl +r+k ++ OGLUM05G02030.1 57 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGTE 121 7*************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPPP PLLPADPPSL ERERLPQWSH 60 AETAAFLAIR ADLDHSFLST KRNKALWEAA SARLHALGFA RTPDQCKSKW KNLVTRFKGT 120 EGAAAVAAAG TDQMQGGQGG GAGARGSSSS FPFHDELRRI FDARVERARA LERKKVKGKD 180 PDDDHDGGGD GDEDDEEEAD QQVDEEDDGA SGDTTRAGSK KRRRKAAAAA AARRTGSTGG 240 VEGEVEAMLR EFMRRQIEME ERWMEAAEAR EAERRAREEE WRTAMVALGE ERLALVRRWR 300 EREDAWRARA EEREERRHQL VAALLAKLGA GDASA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	225	KKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-26	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G02030.1