PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G02350.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 315aa MW: 34449.6 Da PI: 5.5509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G02350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl OGLUM05G02350.1 33 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 80 89********************************************97 PP
2	Myb_DNA-binding	48.3	2.4e-15	86	129	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ OGLUM05G02350.1 86 RGNITANEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 129 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MDLEMEMMGM AMSPAMSSAT AAAASEDEGD LRRGPWTVEE DMLLVDYIAN HGEGRWNSLA 60 RCAGLRRTGK SCRLRWLNYL RPDVRRGNIT ANEQLLILDL HSRWGNRWSK IAQYLPGRTD 120 NEIKNYWRTR VQKHAKQLRC DVNSKEFRDV VRHVWMPRLV ERIQADAAAA GEVAAPAPLS 180 AAATRSMSSP AGAMYLHHQQ IPLAAGAMVV APAVSSEAYH HHGCGGGGDT SCSEPSQAAV 240 TMSPDDASST LRSSSAAAEN DTIHGDVLSG SWSELLATTT TTTIAATAGL PDFDELGDFE 300 DNLWSLEDIW LHQQC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	4e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G02350.1