PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G02640.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 400aa MW: 42642.1 Da PI: 5.8594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G02640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.6	1.7e-16	338	384	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq OGLUM05G02640.1 338 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 384 5***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MLRGNDTGSD LAELLWDNGS PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG 60 GAANHHHHDD DDDDDDVPWL HYHPVVDDDA DADADTAPLP PDYCAALLSG LSDHLPPPAA 120 AASREDPDPC SSSHGAVVPS TSAAAAKQAR TSGGGGGGVM NFTFFSRPLQ QRPSGGETAS 180 ASASAAATST VPVESTVVQA ATNRLRSTPL FSDQRMAWLH PPKPSPRTAA PPPPPPLAPT 240 TRHRLDTAAA TATVAQRLPP SEARAPDAPP PAATATATTS SVCSGNGDRS QLNWRDSHNN 300 QSAEWSASQD ELDLDDELAG VHRRSAARSS KRSRTAEVHN LSERRRRDRI NEKMRALQEL 360 IPNCNKIDKA SMLEEAIEYL KTLQLQVQMM SMGTGMFMSY

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MLRGNDTGSD LAELLWDNGS PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
GAANHHHHDD DDDDDDVPWL HYHPVVDDDA DADADTAPLP PDYCAALLSG LSDHLPPPAA  120
AASREDPDPC SSSHGAVVPS TSAAAAKQAR TSGGGGGGVM NFTFFSRPLQ QRPSGGETAS  180
ASASAAATST VPVESTVVQA ATNRLRSTPL FSDQRMAWLH PPKPSPRTAA PPPPPPLAPT  240
TRHRLDTAAA TATVAQRLPP SEARAPDAPP PAATATATTS SVCSGNGDRS QLNWRDSHNN  300
QSAEWSASQD ELDLDDELAG VHRRSAARSS KRSRTAEVHN LSERRRRDRI NEKMRALQEL  360
IPNCNKIDKA SMLEEAIEYL KTLQLQVQMM SMGTGMFMSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	348	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-31	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G02640.1