PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G04280.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 253aa    MW: 27428.8 Da    PI: 10.2786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G04280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-142771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+e+++da  ++G + Wk+I   +  ++t+ q++s+ qk+
  OGLUM05G04280.1 27 RERWSAEEHERFLDALLLFGRD-WKRIEGFVA-TKTAIQIRSHAQKH 71
                     78******************77.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MAAMAARAAA VGTMKKARKP YTITRPRERW SAEEHERFLD ALLLFGRDWK RIEGFVATKT  60
AIQIRSHAQK HFLKARKFGL AGGLPPPLHP RRAALLRANA AAAAADMMPP PWLPSAGTPS  120
CSGSGESWLA DAAFFSQDET ILLPISPGTG STSLLAFACF KSAAVNSRKF FRSNILSCVI  180
VHFFLISDPH LLAVSCSADD LGFAQVYKFI GDVFGSGEPR PVEAHLRRLQ GMDPAISETI  240
LLVLKNLEAN LSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.16e-28MYB_related family protein