PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G04450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 214aa    MW: 22097.2 Da    PI: 8.8075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G04450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.1e-40311301100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael
  OGLUM05G04450.1  31 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 124
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++ 
  OGLUM05G04450.1 125 AAVRAD 130
                      *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MMARRSCSMP AAGAGPGSAA AAAAAVNTIT PCAACKLLRR RCAQECPFSP YFSPLEPHKF  60
ASVHKVFGAS NVSKMLLEVH ESQRGDAANS LVYEANLRLR DPVYGCMGAI LTLQQQVQAL  120
EAELAAVRAD IARHKYRLPS AAAVLPSSHA SHLLAAAAAA RQLPVAGTMG VVTTATLPAS  180
ASSSSTTAVY AAAAAASSST DYSSITNENV PYFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.17e-58LBD family protein