PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G05440.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 190aa MW: 21012.2 Da PI: 6.2711

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G05440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.4e-30	100	158	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh OGLUM05G05440.1 100 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCSVKKRVERDREDHRYVITTYDGVHNHA 158 59********************************************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PELSAAAIDA DLFSGELDFD CSLPAPAFAG 60 ARQEYPENEN TMMRYESEEK MRARVNGRIG FRTRSEVEIL DDGFKWRKYG KKAVKNSPNP 120 RNYYRCSTEG CSVKKRVERD REDHRYVITT YDGVHNHASP AAAAGDYYSP PLSSAGSPPA 180 AYSAGGSLLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-40	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G05440.1