PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G06690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 446aa MW: 47767.6 Da PI: 8.5828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G06690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	248	292	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f Lr++lP+a +K +Ka++L +A +Y++ L OGLUM05G06690.1 248 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 292 7789*******************9.....9************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ 60 QQLSQAIFMI NSSCLLLIYM LMDMEEHDHQ YATPPSPSSS SFRSFSAGTT TTTTSRDDNS 120 SLMLAAAAAS CHHRTTEVSS QILLPRPGQA ARRSSGGHGA AAAATAFRPY SRYLGPKKHL 180 LRRPGAATTA TGGGGGQRAF KKAISVLSKI HAARLAQYYQ IMEMAARASP AATAGGGGGE 240 NQQLQLQHVL SERKRREKLN DSFKALRDVL PPATKKDKAS VLMRAKDYVN VLKARIAELE 300 EKNRKLSESQ QLHAGDGDGE RDDGPDDDKI EVNTSRSAAD QGSSPNKCQE LHLKIVLGSS 360 SGCSAMDAVA GILQGLNEKR DVSLLATGHN SSSISSSGRR RLLPRANSSQ QPASSSCDEE 420 ILKESVVKDD SPAAVKDVMQ SETLHG

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ  60
QQLSQAIFMI NSSCLLLIYM LMDMEEHDHQ YATPPSPSSS SFRSFSAGTT TTTTSRDDNS  120
SLMLAAAAAS CHHRTTEVSS QILLPRPGQA ARRSSGGHGA AAAATAFRPY SRYLGPKKHL  180
LRRPGAATTA TGGGGGQRAF KKAISVLSKI HAARLAQYYQ IMEMAARASP AATAGGGGGE  240
NQQLQLQHVL SERKRREKLN DSFKALRDVL PPATKKDKAS VLMRAKDYVN VLKARIAELE  300
EKNRKLSESQ QLHAGDGDGE RDDGPDDDKI EVNTSRSAAD QGSSPNKCQE LHLKIVLGSS  360
SGCSAMDAVA GILQGLNEKR DVSLLATGHN SSSISSSGRR RLLPRANSSQ QPASSSCDEE  420
ILKESVVKDD SPAAVKDVMQ SETLHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	257	ERKRRE
2	253	258	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-17	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G06690.1