PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06890.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28696.3 Da    PI: 5.3976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-263684351
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ie++  rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+
  OGLUM05G06890.1 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84
                     99*********************************************95 PP
2K-box47.95.8e-171021964100
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLsl.keLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s+ + ++e +a+++qqe+akLk+ i  Lq+++R ++  +L+ L++  +L ++  +L  +l+kiR++Kne+l+++ie++q++e elq++n++ ++
  OGLUM05G06890.1 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRFII--SLSCLDFfFQLDKVV-HLVIGLEKIRARKNEYLCAEIEYMQRRETELQNDNMYSKS 192
                      34444999**********************977765..788777524666664.5889********************************9999 PP

            K-box  97 klee 100
                      +++e
  OGLUM05G06890.1 193 EVAE 196
                      8875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL  60
SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA  120
KLKQHITYLQ NSNRFIISLS CLDFFFQLDK VVHLVIGLEK IRARKNEYLC AEIEYMQRRE  180
TELQNDNMYS KSEVAESERG LQTVNMMGSA STSEYVQNMI HYDPGNFLQF NIMQQLASLS  240
IILNRRTERP HSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-67MIKC_MADS family protein