PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06890.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 18707.2 Da    PI: 6.5094
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06890.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.6e-273684351
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ie++  rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+
  OGLUM05G06890.4 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84
                     99*********************************************95 PP
2K-box19.93.1e-08102135437
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRh 37 
                      s+ + ++e +a+++qqe+akLk+ i  Lq+++R 
  OGLUM05G06890.4 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRF 135
                      34444999*********************99884 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL  60
SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA  120
KLKQHITYLQ NSNRFIISLS CLDFFFQLDK VVHLVIGLEK IRARKVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.14e-53MIKC_MADS family protein