PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G08360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 210aa MW: 21451.5 Da PI: 6.1506

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G08360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H OGLUM05G08360.1 47 YECVFCKRGFTTAQALGGHMNIH 69 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MDMDDGSSKG SRADESVSSL GTDDHAAAAE PMSSSPPPAT ATARPYYECV FCKRGFTTAQ 60 ALGGHMNIHR RDRAAKPAGP GAAAPPRDAS TTAVSRSVDC YSQFRHLAAA YPVPAATSGA 120 AGTAGSSSSF TMYYGGTGAG AEAAVVAGPR ELSLFDAATD HGLHLGVGRR GGGGDGGESR 180 TPEGSEQQVA GELPERELDL ELRLGRHTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-10	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G08360.1