PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G09300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 71aa    MW: 8077.19 Da    PI: 6.527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G09300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-11448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++eE +l+ +a++ +G g    W++++r mg ++t+ +++ ++
  OGLUM05G09300.1  4 EWSKEENKLFEQAIAYYGEGapdLWHKVSRAMGGTKTADEVRRHF 48
                     7*******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MASEWSKEEN KLFEQAIAYY GEGAPDLWHK VSRAMGGTKT ADEVRRHFEI LVDDIKLIEA  60
RRVPFPKGGS I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-21MYB_related family protein