PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G10360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 318aa    MW: 35093.2 Da    PI: 7.3259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G10360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ Cg+ F++   L  H+++H
  OGLUM05G10360.1 65 YSCSFCGREFRSAQALGGHMNVH 87
                     99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MDPARYWILA RRKLGDQKAP LFPTPHITIG AGGSSASYYE SWEERAFAED SAGHLGGCIW  60
PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV EDGTGGESHG MPPNQNYMIQ  120
PCPPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA RSLLQVAAAR TALGKQVLNA  180
PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL RVGKNELKIT TVLGCRSRRD  240
FMYDNDRADD EETVETSYKK RRIDLEVNPL ILTSSTSNHQ QQDGGDDQHH EKILKLYRSS  300
SVEELDLELR LGEAPKEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.18e-26C2H2 family protein