PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G10480.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 411aa MW: 47179.3 Da PI: 11.1289

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G10480.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	71	114	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ OGLUM05G10480.2 71 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 114 79**************99.****9.*********9875 PP
2	Myb_DNA-binding	30.8	7e-10	215	247	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++vk+ G ++W+++ar m+ +R++ +c++rw + OGLUM05G10480.2 215 RLVKENGFRRWSRVARSMP-RRSARSCRDRWCHH 247 69***************.*********877 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MDQEVIMATP PLPPPPRARC IVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVVPRQVAP 60 PPRPRDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHRW RELRRGGFLA 120 AAARKEQAAL DMADDMVETS EVEEPADQSL PSLELQRSTL ADTLASSFGS CSLATDHVMD 180 PLAGSLALGK YQFFTIIKIE DVFAGTLVRH PWLPRLVKEN GFRRWSRVAR SMPRRSARSC 240 RDRWCHHLAR DIYHRPFTAR DDDELLCLHY RLGDRWKKIG HAVYGRTSRV MNHRWRELRR 300 SGFLAAAART EQTLDMADDM VESKVEESDQ SLPTTRKSII ASGRKGSLQA GRPSACKPTA 360 VKIADLRRRG GRPHAKIIFA GGRWLVRSAC ENNNRPPTKK KLPPAKIGRK Y

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MDQEVIMATP PLPPPPRARC IVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVVPRQVAP  60
PPRPRDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHRW RELRRGGFLA  120
AAARKEQAAL DMADDMVETS EVEEPADQSL PSLELQRSTL ADTLASSFGS CSLATDHVMD  180
PLAGSLALGK YQFFTIIKIE DVFAGTLVRH PWLPRLVKEN GFRRWSRVAR SMPRRSARSC  240
RDRWCHHLAR DIYHRPFTAR DDDELLCLHY RLGDRWKKIG HAVYGRTSRV MNHRWRELRR  300
SGFLAAAART EQTLDMADDM VESKVEESDQ SLPTTRKSII ASGRKGSLQA GRPSACKPTA  360
VKIADLRRRG GRPHAKIIFA GGRWLVRSAC ENNNRPPTKK KLPPAKIGRK Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-20	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G10480.2