PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G12060.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 221aa MW: 23819.4 Da PI: 5.7264

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G12060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.7	4e-10	51	85	18	55
AP2 18 eIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 eIrdp + kr +lg+f+taeeAa+ ++ a+++++g OGLUM05G12060.1 51 EIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 85 79999.....445************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MSPADSLAAG RSRRVGASMP RPKRVRVYFV DADATDTDSS GDERSRPRVR EIRDPSLQKR 60 LWLGTFDTAE EAAAVYDDAA LRIKGSHAVT NFPSDSDTPS AKAKQMKLHP RRHTTPDKTT 120 PSSSTAAAAK ASVPDPKPAP PEEDRANDSS FNPFASPTSV LRYAAADEVT APSFEHLLVE 180 LGDLSAPPPS TKAAEFDWLP WWEGEDFVTA GLTASNAVSV K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03800.1	1e-07	ERF family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G12060.1