PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G12420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 215aa    MW: 22619 Da    PI: 5.8995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G12420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.54.7e-271574258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                     dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  OGLUM05G12420.1 15 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 74
                     8***************************99999*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVAAQWTGNT EQPPDDGYTW RKYGQKDILG SRYPRSYYRC THKNYYGCEA KKKVQRLDDD  60
PFTYEVTYCG NHTCLTSTTP LLTLPAAAAT SVTNSPTAAA VLGQDLVMAP AADQQPPQHQ  120
QAQPPLSTSI HLGIGWPMTP ASLAGAVGEG STSTTATAPQ VTTMGATAAG GGGAAARDAD  180
HYPVADLADV MFNSGGSGSS SIMDGIFSSH DRRDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-37WRKY family protein