PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G16380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 616aa    MW: 65943.4 Da    PI: 4.8993
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G16380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.73.4e-15261314255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                      +r  Wt+  H++Fv+a eqL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  OGLUM05G16380.1 261 TRFTWTTVSHTSFVRAYEQL--KDQEGPKKIKQLMELDGIfvTKTQVSSHLQKYRS 314
                      799*****************..999**************655999**********6 PP
2Response_reg59.22.3e-20251301107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy  v+  +++eeal+ ++++    +++i++D+ m+gmdG++ll +i+    ++p+i+++  ++  ++ + + 
  OGLUM05G16380.1  25 VLVVDDDAAYLEELKLMLLLAGY-AVTGKTTAEEALKEVDQNPedyFHIIMTDVHMSGMDGFDLLHRING---RVPVIMFSEGEDVVMVMRTVM 114
                      89*********************.***************7777777**********************98...67******************* PP

                      TTESEEEESS--HHHH CS
     Response_reg  92 aGakdflsKpfdpeel 107
                       Ga d+ +Kp+  e++
  OGLUM05G16380.1 115 NGACDYMVKPMTSEAI 130
                      **********998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    
MAENNGAVPP GCKLPAGGFL GRLHVLVVDD DAAYLEELKL MLLLAGYAVT GKTTAEEALK  60
EVDQNPEDYF HIIMTDVHMS GMDGFDLLHR INGRVPVIMF SEGEDVVMVM RTVMNGACDY  120
MVKPMTSEAI KFIWKHVLRW RLSALPANAS SSLQPSDHLA AALAAVAPPP PPAVQLPAAP  180
AQAGNRDGEA HEEAELSTQP PALVPSGVQE AAAAVWSSRG DGQEAPPPAV KAPSKKRGAS  240
EVSDRGSNNL EATTGRKKVR TRFTWTTVSH TSFVRAYEQL KDQEGPKKIK QLMELDGIFV  300
TKTQVSSHLQ KYRSWLENER KKEEATSSSP CNPLSYTNCL DRGYSTWKQS SVITEGQQSS  360
SFSGRPIHSM ATSNGCLTTT DTQAGNYVGV GAKEIENFIS SHQRCLGTAI GQESTIEQAS  420
LHSEITSVSR DAHENGNSQA RGSAMSNGTS GTRGVLVTNE NLLHVVSASL PSNMGQPTQP  480
SQSFCTNELA ANYSIISDQN PGTSHPTSSS AINNQNSKTQ EMSVSQTVEL GCGNDVMLDW  540
PELVGLEDQL DNDVLMNSFF DGDLLQQGVV TAIDGTQEML AFDSTGDLGS VPPRGLNNEI  600
ASHENTNGKN GASSGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-19ARR-B family protein