PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G16390.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 368aa    MW: 40331.1 Da    PI: 8.3684
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G16390.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.22e-14182224144
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                      k+r rW +eLHerFv+ v qL G +kAtP +il l++ ++Lt++
  OGLUM05G16390.1 182 KKRFRWPKELHERFVSIVLQL-GVDKATPNQILPLLNREDLTRD 224
                      68*******************.********************97 PP
2Response_reg43.22.2e-156515326109
                      EEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  26 vaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      v++++  ++a + ++e++     +D++l+ +  p  +dG++ll+   + +++lp++v++a +++ ++l++++ Ga d+l+Kp   eel +
  OGLUM05G16390.1  65 VDAVTPKTAARDAVEELHenpwsYDMVLTEVHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVNSGACDYLVKPLRHEELKN 153
                      5556666666666666666669************99********9755.559**********************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MAGSCSVAGS NKSKLADEEF SPVGMRVLLI DESTTYLKII TKLLLNCGYK GLTVTNFEIT  60
YVWRVDAVTP KTAARDAVEE LHENPWSYDM VLTEVHAPAG IDGFNLLQYA GTDMDLPVVV  120
FSADDDKRTV LKCVNSGACD YLVKPLRHEE LKNIWQHVYR RKLRSGGRRA AAAGNSSKGE  180
IKKRFRWPKE LHERFVSIVL QLGVDKATPN QILPLLNRED LTRDQRFRIA LTKSKALPSC  240
STIPIGETVH GIPLALQAIG TGNNQHLIVP FNRITFVRPR GVEICQNGVV GGLVTGNNNV  300
VVPTATSIIA RAFGREIVNG ADLFDHGTLI RDSSSTSHDG AQNELGETNL AFELMAKKGS  360
DVEPRIGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-35ARR-B family protein