PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G17550.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 315aa    MW: 34288.6 Da    PI: 4.544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G17550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1462e-45101381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp GfrFhPtdeelv +yL+++++g ++++  +i++v+iy+++Pw+Lp+++  +e+ewyfF+ rd++y+++ r++r+++sg+Wkatg+dk+v +
  OGLUM05G17550.1  10 LPTGFRFHPTDEELVINYLQRRATGLSCPI-PIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPVQV 102
                      699***************************.88***************76667999************************************99 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++ v +kk Lvfy gr p  +kt+W+mheyrl
  OGLUM05G17550.1 103 AnmQSTPVAMKKALVFYVGRPPMETKTTWIMHEYRL 138
                      8667777***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MAMQLSLPVL PTGFRFHPTD EELVINYLQR RATGLSCPIP IIADVEIYNF NPWELPSMAL  60
FGEHEWYFFT LRDHRYPNSV RPSRSAASGF WKATGTDKPV QVANMQSTPV AMKKALVFYV  120
GRPPMETKTT WIMHEYRLTN TGGSTASHPS LSSSTAHPSV KLDEWVLCKI FNKSPEPDNT  180
APPSNVVSRL QCSPPLPPPA APPGNYPPLP VGATNDGGVF AGAGDMLFTI QEHQEGTPSM  240
LPPIPNLEPP AATIGNSSLN GTAAAAAAAA AAADDGHGRL EEEDTSAYTF TDQEMEQMLM  300
DLMDQDFFGN DQPQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-65NAC family protein