PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G17770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 417aa MW: 44692.6 Da PI: 6.7218

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G17770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	4e-49	42	167	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + + OGLUM05G17770.1 42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGE 134 79*************************.89***********7777899************************************ PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy+g+apkg++++W+m+eyrl OGLUM05G17770.1 135 NSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167 *****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MSRDDVDDVT AGAAGSGEEA AADQEEAAAA VAGDSHENDL VMPGFRFHPT EEELIEFYLR 60 RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG 120 YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADLFYKS 180 EISLCRVYKR SGIDDGHGHH QRPAGNVQAS SSSAAARPPE QHSGNNTAAG LPACRHRPSP 240 SSSSTTTAQQ HTSFHQLLQG ECSSAAAAAP PPPSLPASAT TRNSNASQLL MPPPPPRPPC 300 AAAYTSAAAA PTESAAVLAA ASTYSLLAAA GSSSTHIDEL STLLAGHSHG GAYVNNHIVA 360 GSHHHFPLPP SQLMPQLGTL PISPPLAAVS DKLWDWSSVP DTSTARDYDS SGFSDPK

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MSRDDVDDVT AGAAGSGEEA AADQEEAAAA VAGDSHENDL VMPGFRFHPT EEELIEFYLR  60
RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG  120
YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADLFYKS  180
EISLCRVYKR SGIDDGHGHH QRPAGNVQAS SSSAAARPPE QHSGNNTAAG LPACRHRPSP  240
SSSSTTTAQQ HTSFHQLLQG ECSSAAAAAP PPPSLPASAT TRNSNASQLL MPPPPPRPPC  300
AAAYTSAAAA PTESAAVLAA ASTYSLLAAA GSSSTHIDEL STLLAGHSHG GAYVNNHIVA  360
GSHHHFPLPP SQLMPQLGTL PISPPLAAVS DKLWDWSSVP DTSTARDYDS SGFSDPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-95	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G17770.1