PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G17980.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 320aa    MW: 34466.1 Da    PI: 9.0171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G17980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.7e-51171411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv++yL+++++g ++ +  +i+evd+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+v +
  OGLUM05G17980.1  17 LPPGFRFHPTDEELVMHYLCRRCAGLPIAV-PIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGT 109
                      79**************************99.88***************7666789*************************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v +kk Lvfy g+apkg kt+W+mheyrl
  OGLUM05G17980.1 110 --PRPVAIKKALVFYAGKAPKGDKTNWIMHEYRL 141
                      ..779***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MSGGEGAAAA ERQELQLPPG FRFHPTDEEL VMHYLCRRCA GLPIAVPIIA EVDLYKFDPW  60
HLPRMALYGE KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPVGTP RPVAIKKALV  120
FYAGKAPKGD KTNWIMHEYR LADVDRSARK KNTLRLDDWV LCRIYNKKGG VEKPSGGGGG  180
ERSNMMSHGK TASAGSPPEQ KPAVLPPPPP PYAAAAPFSE LAAFYDVRPS DSVPRAHGAD  240
SSCSEHVLTT SASSGGVVER PEVQSQPKIA EWERTFAGAA APAGAVSTAG PILGQLDPAA  300
VAGGGDPLLQ DILMYWGKPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-107NAC family protein