PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G19230.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 181aa MW: 20172.5 Da PI: 8.7409

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G19230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.6e-08	25	71	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ Ed+ + a ++ + +W+++a++++ gR++ ++ ++++ + OGLUM05G19230.1 25 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYRVL 71 8*************9999999******.*********976 PP
2	Myb_DNA-binding	45.3	2e-14	113	157	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qk+ OGLUM05G19230.1 113 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 157 8******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MAFYGGEMGG SSSSWVAPLV PSSRPWSKAE DKVFESALVA FPEHTHNRWA LVASRLPGRS 60 AHEVWEHYRV LVDDVDLIEC GMVASPGCWD DGAGRGGAQG ASRGGDERRR GVPWTEEEHR 120 LFLEGLEKYG RGDWRNISRW SVKTRTPTQV ASHAQKFFIR QANAGNRSDS KRKSIHDIIA 180 P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	8e-46	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G19230.1