PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 260aa    MW: 28905.7 Da    PI: 6.2938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.64.2e-3541261128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppG+rF Pt+eelv++yL++k++g +   ++e+vi+ +d ++          +++ + w++F++r++++a+g r++r+t sgyWka g+   v
  OGLUM05G19250.1   4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADAHQ---GA----WTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWV 90 
                      79***********************995444444455544443...33....3457789*********************************** PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s++g+ +g+kkt+vfy+grap g kt+W m+eyr+
  OGLUM05G19250.1  91 YSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 126
                      **********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADAHQGAWT GDGEPWFYFC  60
PRQEREARGG RPSRTTPSGY WKAAGTPGWV YSSDGRPIGT KKTMVFYRGR APAGAKTKWK  120
MNEYRAFEED DDNAAAAAPA QNHYLQTRSD FSLCRLYTRS GCPRQFDRRP PSSSVASGGG  180
ENRAAPSSTA AAFANEDAAE SSGKSQKRKR SAPDDRLDST SSSDDNGGCD GSMLQQRQRG  240
TDEELVECSM TDWADLLDWF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-59NAC family protein