PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19360.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 388aa    MW: 42042.9 Da    PI: 6.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19360.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06212231120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  OGLUM05G19360.3 212 FVCHVCNKAFNRYNNMQMHM 231
                      89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED  120
APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS  180
SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK  240
GPESLKGTQA TATLAMLKLP CYCCAAGCRN NVGHPRARPL KDFRTLQTHY KRKHGAKPFA  300
CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH FPVAAAAAHA  360
AAAPPKQQQR IIRFDDAMAP MHGGGLMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.17e-95C2H2 family protein