PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G20280.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 455aa MW: 50467.8 Da PI: 8.3993

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G20280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	55	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l OGLUM05G20280.1 55 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 101 688***************************.**********986 PP
2	Myb_DNA-binding	30.5	8.2e-10	107	135	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd+ +++ vk++G++ W+ Iar OGLUM05G20280.1 107 KGPWTQEEDDVIINMVKKHGPKKWSVIAR 135 79*************************97 PP
3	Myb_DNA-binding	51.8	1.9e-16	146	189	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ OGLUM05G20280.1 146 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 189 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP 60 EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN 120 MVKKHGPKKW SVIARWHNHL DPQIRKEAWT VEEERVLARA HCMYGNKWAE IAKLLPGRTD 180 NSIKNHWNSS LRKKIDDYNT RDILPVHPPV VGDGLKQLPK RPPADNHFDL NKEPIICSRD 240 RLGVVHSDPT SHQRASNLKD FKGCADYLSL GQPVTSCEAS AADDSAFDLA TQGMRMDSVH 300 DKGTGNNFVC GKVQGINFLG DKGLKINQIS DKMGCSRQAK REGEAAINGG GSSLQSEAHS 360 VGSLCYQIPK MEDIAPAQSP VFTANYVPEH SRNVMHSPNG YTTPPTHGKG SDQLSVESIL 420 RSAAEKFHET ASDVLKWERR PDASKFNVVT LPKGK

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP  60
EEDEKLRKAV DIYNGKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW TQEEDDVIIN  120
MVKKHGPKKW SVIARWHNHL DPQIRKEAWT VEEERVLARA HCMYGNKWAE IAKLLPGRTD  180
NSIKNHWNSS LRKKIDDYNT RDILPVHPPV VGDGLKQLPK RPPADNHFDL NKEPIICSRD  240
RLGVVHSDPT SHQRASNLKD FKGCADYLSL GQPVTSCEAS AADDSAFDLA TQGMRMDSVH  300
DKGTGNNFVC GKVQGINFLG DKGLKINQIS DKMGCSRQAK REGEAAINGG GSSLQSEAHS  360
VGSLCYQIPK MEDIAPAQSP VFTANYVPEH SRNVMHSPNG YTTPPTHGKG SDQLSVESIL  420
RSAAEKFHET ASDVLKWERR PDASKFNVVT LPKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-82	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G20280.1