PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G20280.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 447aa MW: 49573.9 Da PI: 8.5567

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G20280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.7e-09	55	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEde+l +av + g++Wk+I qc +rwqk+ OGLUM05G20280.2 55 KGGWTPEEDEKLRKAVDIYNGKNWKKI----E-----VQCLHRWQKV 92 688***********************5....3.....4577777775 PP
2	Myb_DNA-binding	30.6	8e-10	99	127	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd+ +++ vk++G++ W+ Iar OGLUM05G20280.2 99 KGPWTQEEDDVIINMVKKHGPKKWSVIAR 127 79*************************97 PP
3	Myb_DNA-binding	51.8	1.8e-16	138	181	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ OGLUM05G20280.2 138 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 181 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP 60 EEDEKLRKAV DIYNGKNWKK IEVQCLHRWQ KVLDPELIKG PWTQEEDDVI INMVKKHGPK 120 KWSVIARWHN HLDPQIRKEA WTVEEERVLA RAHCMYGNKW AEIAKLLPGR TDNSIKNHWN 180 SSLRKKIDDY NTRDILPVHP PVVGDGLKQL PKRPPADNHF DLNKEPIICS RDRLGVVHSD 240 PTSHQRASNL KDFKGCADYL SLGQPVTSCE ASAADDSAFD LATQGMRMDS VHDKGTGNNF 300 VCGKVQGINF LGDKGLKINQ ISDKMGCSRQ AKREGEAAIN GGGSSLQSEA HSVGSLCYQI 360 PKMEDIAPAQ SPVFTANYVP EHSRNVMHSP NGYTTPPTHG KGSDQLSVES ILRSAAEKFH 420 ETASDVLKWE RRPDASKFNV VTLPKGK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP  60
EEDEKLRKAV DIYNGKNWKK IEVQCLHRWQ KVLDPELIKG PWTQEEDDVI INMVKKHGPK  120
KWSVIARWHN HLDPQIRKEA WTVEEERVLA RAHCMYGNKW AEIAKLLPGR TDNSIKNHWN  180
SSLRKKIDDY NTRDILPVHP PVVGDGLKQL PKRPPADNHF DLNKEPIICS RDRLGVVHSD  240
PTSHQRASNL KDFKGCADYL SLGQPVTSCE ASAADDSAFD LATQGMRMDS VHDKGTGNNF  300
VCGKVQGINF LGDKGLKINQ ISDKMGCSRQ AKREGEAAIN GGGSSLQSEA HSVGSLCYQI  360
PKMEDIAPAQ SPVFTANYVP EHSRNVMHSP NGYTTPPTHG KGSDQLSVES ILRSAAEKFH  420
ETASDVLKWE RRPDASKFNV VTLPKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G20280.2