PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G20400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 174aa MW: 18004.1 Da PI: 8.3722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G20400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00083	33	52	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F++ L H OGLUM05G20400.1 33 FRCKTCSKTFTSFQALGGHR 52 89*********988886665 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MASGQRAVGE GSGGLRPTTH VAGGGGSARG EYFRCKTCSK TFTSFQALGG HRTGHTRMAA 60 RQRQEHGAAG AAVVGATNNQ RRVVSAHQWH LCAVCGVEFR MGQALGGHMR RHRGEAAAAT 120 PPAAAAAASA GAVSSVEPPE MLDLNSPPAV EEAGEGDQEV ERAEQEPRLL NLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G20400.1