PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G25760.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 414aa MW: 42246.8 Da PI: 6.6305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G25760.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	310	350	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L OGLUM05G25760.1 310 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 350 599***************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY 60 GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD 120 RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT 180 ALPPSKRKLP EKYPVVGTSS TTKTTTTSET AAERRSTKRA AGGSSSITFG GGRHGAGAAA 240 ALLGLGRGYE PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR 300 ISSDPQTVAA RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL 360 GNGNGNGNLL HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT  180
ALPPSKRKLP EKYPVVGTSS TTKTTTTSET AAERRSTKRA AGGSSSITFG GGRHGAGAAA  240
ALLGLGRGYE PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR  300
ISSDPQTVAA RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL  360
GNGNGNGNLL HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	297	RPRRK
2	311	316	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-27	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G25760.1